A new study has concluded that the earliest ancestors of anatomically modern humans (Homo sapiens sapiens) emerged in a southern African homeland and thrived there for 70 000 years.
The breakthrough findings are published in the journal Nature, with the authors proposing that changes in Africa’s climate triggered the first human explorations, which initiated the development of humans’ genetic, ethnic and cultural diversity.
This study provides a window into the first 100 000 years of modern humans’ history.
“It has been clear for some time that anatomically modern humans appeared in Africa roughly 200 000 years ago,” says study lead Professor Vanessa Hayes from the Garvan Institute of Medical Research and University of Sydney, and Extraordinary Professor at the University of Pretoria.
“What has been long debated is the exact location of this emergence and subsequent dispersal of our earliest ancestors.
“Mitochondrial DNA acts like a time capsule of our ancestral mothers, accumulating changes slowly over generations. Comparing the complete DNA code, or mitogenome, from different individuals provides information on how closely they are related.”
In their study, Prof Hayes and her colleagues collected blood samples to establish a comprehensive catalogue of modern human’s earliest mitogenomes from the so-called ‘L0’ lineage.
“Our work would not have been possible without the generous contributions of local communities and study participants in Namibia and South Africa, which allowed us to uncover rare and new L0 sub-branches,” says study author and public health Professor Riana Bornman from the University of Pretoria.
“We merged 198 new, rare mitogenomes to the current database of modern human’s earliest known population, the L0 lineage. This allowed us to refine the evolutionary tree of our earliest ancestral branches better than ever before,” says first author Dr Eva Chan from the Garvan Institute of Medical Research, who led the phylogenetic analyses.

Dr Eva Chan and Professor Vanessa Hayes.
By combining the L0 lineage timeline with the linguistic, cultural and geographic distributions of different sublineages, the study authors revealed that 200 thousand years ago, the first Homo sapiens sapiens maternal lineage emerged in a ‘homeland’ south of the Greater Zambezi River Basin region, which includes the entire expanse of northern Botswana into Namibia to the west and Zimbabwe to the east.
Investigating existing geological, archeological and fossil evidence, geologist Dr Andy Moore, from Rhodes University, revealed that the homeland region once held Africa’s largest ever lake system, Lake Makgadikgadi.
“Prior to modern human emergence, the lake had begun to drain due to shifts in underlying tectonic plates. This would have created, a vast wetland, which is known to be one of the most productive ecosystems for sustaining life,” says Dr Moore.
The authors’ new evolutionary timelines suggest that the ancient wetland ecosystem provided a stable ecological environment for modern humans’ first ancestors to thrive for 70 000 years.
“We observed significant genetic divergence in the modern humans’ earliest maternal sub-lineages, that indicates our ancestors migrated out of the homeland between 130 000 and 110 000 years ago,” explains Prof Hayes.
“The first migrants ventured northeast, followed by a second wave of migrants who travelled southwest. A third population remained in the homeland until today.
“In contrast to the northeasterly migrants, the southwesterly explorers appear to flourish, experiencing steady population growth,” she adds.
The authors speculate that the success of this migration was most likely a result of adaptation to marine foraging, which is further supported by extensive archaeological evidence along the southern tip of Africa.
To investigate what may have driven these early human migrations, co-corresponding author Professor Axel Timmermann, director of the IBS Center for Climate Physics at Pusan National University, analysed climate computer model simulations and geological data, which capture southern Africa’s climate history of the past 250 thousand years.
“Our simulations suggest that the slow wobble of Earth’s axis changes summer solar radiation in the Southern Hemisphere, leading to periodic shifts in rainfall across southern Africa,” says Prof Timmermann.
“These shifts in climate would have opened green, vegetated corridors, first 130 000 years ago to the northeast, and then around 110 000 years ago to the southwest, allowing our earliest ancestors to migrate away from the homeland for the first time.”
Prof Hayes adds: “These first migrants left behind a homeland population. Eventually adapting to the drying lands, maternal descendants of the homeland population can be found in the greater Kalahari region today.”
The study combined the disciplines of genetics, geology and climatic physics.